diff --git a/configure.ac b/configure.ac
index 5d78807e6..7ebeeebf5 100644
--- a/configure.ac
+++ b/configure.ac
@@ -37,5 +37,5 @@ AC_CHECK_FUNCS([select])
 AC_CHECK_FUNC(flock, [AC_DEFINE([HAVE_FLOCK], [1], [Found flock])])
 AC_CHECK_FUNC(uuid_unparse_lower, [AC_DEFINE([HAVE_UUID], [1], [Found uuid_unparse_lower])])
 
-AC_CONFIG_FILES([Makefile])
+AC_CONFIG_FILES([Makefile src/Makefile])
 AC_OUTPUT
diff --git a/src/.gitignore b/src/.gitignore
index 5761abcfd..cc00087e8 100644
--- a/src/.gitignore
+++ b/src/.gitignore
@@ -1 +1,2 @@
+Makefile
 *.o